Well 3 turns out on one cylinder and seven????? on the other seems way out of whack. I didn't think you could even back them out that far without them falling out. They "should" be close to the same settings. You may have to rejet with no baffles in your pipes.
On a side note, I have those pipes on my 83 750VT and have drilled a few holes in the back plate to get a little more sound and my A/F are 3.5 turns out for both cylinders. I was considering removing the baffles as well but thought I might pick up some bigger jets first.
So how do you like the sound with the baffles removed? Is it obnoxiously loud at highway speed? sound good in idle? Are you happy with the results?
I would check your plugs to see their condition, you may be too lean with stock(assuming) jets and opened pipes. Good luck !!!